Molecular dynamics in a grand ensemble: Bergmann–Lebowitz model and adaptive resolution simulation

نویسنده

  • Animesh Agarwal
چکیده

This article deals with themolecular dynamics simulation of open systems that can exchange energy andmatter with a reservoir; the physics of the reservoir and its interactions with the system are described by themodel introduced by Bergmann and Lebowitz (PGBergmann and J L Lebowitz 1955 Phys. Rev. 99 578). Despite its conceptual appeal, themodel did not gain popularity in thefield of molecular simulation and, as a consequence, did not play a role in the development of open system molecular simulation techniques, even though it can provide the conceptual legitimation of simulation techniques thatmimic open systems.We shall demonstrate that themodel can serve as a tool in devising both numerical procedures and conceptual definitions of physical quantities that cannot be defined in a straightforwardway by systemswith afixed number ofmolecules. In particular, we discuss the utility of the Bergmann–Lebowitz (BL)model for the calculation of equilibrium time correlation functions within the grand canonical adaptive resolutionmethod (GC-AdResS) and report numerical results for the case of liquidwater.

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Grand-canonical-like molecular-dynamics simulations by using an adaptive-resolution technique

In this work, we provide a detailed theoretical analysis, supported by numerical tests, of the reliability of the adaptive resolution simulation (AdResS) technique in sampling the Grand Canonical ensemble. We demonstrate that the correct density and radial distribution functions in the hybrid region, where molecules change resolution, are two necessary conditions for considering the atomistic a...

متن کامل

Size Dependence of the Elastic Properties of Pd Nanowire: Molecular Dynamics Simulation

The mechanical properties including elastic stiffness constants as well as bulk modulus of Palladium (Pd) nanowire were calculated in the constant temperature and pressure (NPT), ensemble by molecular dynamics (MD) simulation technique. The quantum Sutton-Chen (Q-SC) many-body potential was used to calculate the cohesive energy as well as forces experience by every atoms. The temperature and pr...

متن کامل

Molecular dynamics simulation of interaction of Melittin and DMPC bilayer: Temperature dependence

The interaction between proteins and membranes has an important role in biological pro-cesses.We have calculated energies of interaction between Melittin and DMPC bilayer in differenttemperatures. We have used the CHARMM software for MD simulation under the canonical (N,V, E) ensemble at different temperatures. The computations have shown that water moleculeshave more penetration into the bilay...

متن کامل

The grand canonical ABC model

We investigate the phase diagram of a three-component system of particles on a one-dimensional filled lattice, or equivalently of a one-dimensional three-state Potts model, with reflection asymmetric mean-field interactions. The three types of particles are designated as A, B and C. The system is described by a grand canonical ensemble with temperature T and chemical potentials T λA, T λB and T...

متن کامل

بررسی فرآیند ذوب پریلین با استفاده از شبیه‌سازی دینامیک مولکولی

Melting process of perylene is investigated using molecular dynamics simulation. Some of thermodynamic properties such as potential energy and transition order parameter are calculated as a function of temperature in the range of 500 K-600 K. These calculations are performed by two different methods in NPT and NVT ensembles. The selected interaction potential is Re-squared and the simulations a...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

عنوان ژورنال:

دوره   شماره 

صفحات  -

تاریخ انتشار 2015